Make setup-intellij.sh work again.

This is purely symptomatic treatment; setup-intellij.sh is just an evil hack until we can get proper IDE integration up and running, so it will do for the time being.

--
MOS_MIGRATED_REVID=125136689
diff --git a/scripts/setup-intellij.sh b/scripts/setup-intellij.sh
index cd4a19b..ac645d8 100755
--- a/scripts/setup-intellij.sh
+++ b/scripts/setup-intellij.sh
@@ -149,16 +149,16 @@
     <orderEntry type="inheritedJdk" />
 EOF
 
+for path_pair in ${GENERATED_PATHS}; do
+  write_jar_entry ${path_pair//:/ }
+done
+
 for jar in ${THIRD_PARTY_JAR_PATHS}; do
   if [[ jar != "$javac_jar" ]]; then
     write_jar_entry $jar
   fi
 done
 
-for path_pair in ${GENERATED_PATHS}; do
-  write_jar_entry ${path_pair//:/ }
-done
-
 write_jar_entry "bazel-bin/src/main/protobuf"
 
 cat >> $iml_file <<'EOF'