Download cached source directories in the runfiles of top-level targets (#31473)

### Description

The files below a source directory of a repo that has been retrieved from the remote repo contents cache are only downloaded when the directory is requested from the prefetcher. For the runfiles of a top-level target, only artifacts with remote metadata were requested, which a source directory doesn't have.

Source directories in external repos are now requested as well if they are selected for download.

### Motivation

With a source directory of a cached repo in the runfiles of a binary, `bazel run` ran the binary without the directory in its runfiles tree.

Work towards #31456

### Build API Changes

No

### Release Notes

RELNOTES: None

Closes #31473

COPYBARA_INTEGRATE_REVIEW=https://github.com/bazelbuild/bazel/pull/31473 from fmeum:rrcc-run-source-directories 99e1973eee3e244b8e44e7191c63822c55f78f52
PiperOrigin-RevId: 999899308
Change-Id: I72c3806cc741f20d19b3aaeeb0202ef8c49de322
2 files changed
tree: 3d787fa3473566dfd3cb03f8e829f8c03a1624ba
  1. .bazelci/
  2. .devcontainer/
  3. .gemini/
  4. .github/
  5. docs/
  6. examples/
  7. scripts/
  8. src/
  9. third_party/
  10. tools/
  11. .bazelrc
  12. .bazelversion
  13. .gitattributes
  14. .gitignore
  15. AGENTS.md
  16. AUTHORS
  17. bazel_downloader.cfg
  18. BUILD
  19. CHANGELOG.md
  20. CODE_OF_CONDUCT.md
  21. CODEOWNERS
  22. combine_distfiles.py
  23. combine_distfiles_to_tar.sh
  24. compile.sh
  25. CONTRIBUTING.md
  26. CONTRIBUTORS
  27. distdir.bzl
  28. extensions.bzl
  29. LICENSE
  30. maven_install.json
  31. MODULE.bazel
  32. MODULE.bazel.lock
  33. oneversion_allowlist.csv
  34. oneversion_allowlist_for_tests.csv
  35. pyproject.toml
  36. README.md
  37. repositories.bzl
  38. requirements.txt
  39. SECURITY.md
  40. verify_module_bazel_lock.sh
README.md

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