[8.5.0] Inject repositories after root module file processed (#27904)

This fixes an issue where repositories injected with
`--inject_repository` can invalidate `MODULE.bazel.lock` by changing the
order innate `use_repo_rule` extensions are registered.

For example;
```starlark
# //:MODULE.bazel
local_repository = use_repo_rule("@//:defs.bzl", "local_repository")
local_repository(name = "repo")
```
```shell
bazel mod dump_repo_mapping '' --inject_repository=my_repo=%workspace%/other_repo
# Bazel 9+
# {"my_repo":"+local_repository+my_repo","repo":"+local_repository2+repo",...}
# Bazel 8
# {"my_repo":"+_repo_rules+my_repo","repo":"+_repo_rules2+repo",...}
```

Handling repository injections later changes how collisions with
apparent repository names from innate extensions
(`use_repo_rule(...)(...)`) and module extensions
(`use_extension(...).__(...)`) are reported. To permit debugging (and
improve collision investigation in general) the error message now refers
to the incoming and existing repo name definition.

For example;
```diff
-Error in use_repo: The repo name 'my_repo' is already being used by --inject_repository at <builtin>
+ERROR: The repo name 'my_repo' cannot be defined by --inject_repository at <builtin> as it is already defined by a use_repo() call at /___/MODULE.bazel:2:9
```

Closes #27795.

PiperOrigin-RevId: 841889374
Change-Id: I01a4500ae5580338f96d593323c1d680fdbb7672

Commit
https://github.com/bazelbuild/bazel/commit/d564fc98a07af395463ba07ddc6ae5de884e39d2

---------

Co-authored-by: Jordan Mele <mele@canva.com>
Co-authored-by: Yun Peng <pcloudy@google.com>
Co-authored-by: Fabian Meumertzheim <fabian@meumertzhe.im>
4 files changed
tree: c5879f018cc3d3d9e74f29336ca89c9849db6c7a
  1. .bazelci/
  2. .github/
  3. examples/
  4. scripts/
  5. site/
  6. src/
  7. third_party/
  8. tools/
  9. .bazelrc
  10. .bazelversion
  11. .gitattributes
  12. .gitignore
  13. AUTHORS
  14. bazel_downloader.cfg
  15. BUILD
  16. CHANGELOG.md
  17. CODE_OF_CONDUCT.md
  18. CODEOWNERS
  19. combine_distfiles.py
  20. combine_distfiles_to_tar.sh
  21. compile.sh
  22. CONTRIBUTING.md
  23. CONTRIBUTORS
  24. distdir.bzl
  25. extensions.bzl
  26. LICENSE
  27. maven_install.json
  28. MODULE.bazel
  29. MODULE.bazel.lock
  30. README.md
  31. repositories.bzl
  32. requirements.txt
  33. SECURITY.md
  34. workspace_deps.bzl
README.md

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